JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG7_chr12_92697989_92777455	0/0	t0007	2570	14	5	8	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0008	2572	13	1	4	1	2	5	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0009	2570	11	1	3	6	1	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0010	2566	6	6	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0011	2565	5	4	1	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0012	2570	5	5	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0013	2566	4	4	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0014	2576	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0015	2572	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0016	2570	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0017	2572	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0018	2582	1	0	0	1	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0019	2572	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0020	2570	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0021	2570	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0022	2566	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0023	2566	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0024	2565	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0025	2571	1	0	0	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0026	2565	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0027	2567	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHH1_chr14_67528290_67594612	0/0	t0001	2521	218	29	47	103	10	29	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/1	t0002	2521	118	45	15	52	1	4	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0003	2521	22	5	9	5	1	2	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0004	2522	19	1	2	8	2	6	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0005	2521	10	0	0	1	2	7	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0006	2521	5	5	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0007	2521	4	4	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0008	2521	4	3	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0009	2522	4	0	1	3	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0010	2521	3	3	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	1/0	t0011	2521	2	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0012	2521	2	2	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0013	2521	1	0	0	1	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0014	2521	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	t0015	2522	1	0	0	1	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH2_chr2_43632260_43772987	1/1	t0001	2513	99	17	29	28	5	18	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0002	2513	86	43	15	14	2	12	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0003	2513	21	9	3	0	1	8	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0004	2513	11	6	2	2	1	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0005	2513	7	5	2	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0006	2513	6	6	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0007	2513	4	4	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0008	2513	3	3	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0009	2513	3	0	0	3	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0010	2513	3	0	2	0	1	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0011	2513	2	2	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0012	2513	2	0	0	2	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0013	2513	2	0	2	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0014	2513	2	1	1	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987