JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHH2_chr2_43632260_43772987	0/0	t0015	2513	1	0	0	1	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0016	2513	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0017	2513	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0018	2513	1	0	0	1	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	t0019	2513	1	0	0	1	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH3_chr17_42662914_42681994	1/0	t0001	645	186	38	37	75	9	26	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/1	t0002	644	154	30	39	70	3	11	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	t0003	646	12	11	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	t0004	644	7	7	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	t0005	644	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	t0006	644	1	0	0	0	0	1	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	t0007	644	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHJ1_chr19_2228153_2241329	1/1	t0001	769	316	70	65	128	13	38	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0002	768	54	13	9	30	0	2	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0003	769	30	2	7	15	3	3	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0004	769	16	0	1	15	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0005	769	4	4	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0006	736	2	2	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0007	769	1	1	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0008	769	1	1	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0009	769	1	0	0	0	0	1	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	t0010	769	1	1	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHM1_chr17_45430900_45495721	0/1	t0001	2070	265	77	49	115	7	16	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0002	2070	20	1	8	1	4	6	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0003	2070	17	0	6	1	4	6	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0004	2070	5	5	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0005	2070	3	3	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0006	2070	3	0	3	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0007	2070	2	0	0	0	0	2	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0008	2070	2	2	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0009	2070	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0010	2070	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0011	2070	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0012	2070	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0013	2070	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0014	2070	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0015	2070	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	t0016	2070	1	0	0	0	1	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM2_chr1_15679320_15739769	0/1	t0001	1078	105	8	26	54	4	12	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	1/0	t0002	1075	102	15	23	37	8	18	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0003	1078	54	25	10	5	5	9	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0004	1078	20	16	4	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0005	1075	10	2	3	3	0	2	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0006	1078	9	8	1	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0007	1075	7	0	0	7	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0008	1078	7	6	1	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0009	1075	4	0	0	4	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0010	1078	3	1	2	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0011	1078	3	3	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0012	1078	3	3	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769