JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHM2_chr1_15679320_15739769	0/0	t0013	1090	2	2	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0014	1078	1	0	0	0	1	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0015	1078	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0016	1078	1	0	0	1	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0017	1075	1	0	0	1	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0018	1075	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0019	1060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	t0020	1078	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM3_chr2_207816288_208030527	1/0	t0001	7489	46	10	19	5	4	7	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/1	t0002	7489	35	3	8	16	3	4	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0003	7470	32	7	4	13	5	3	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0004	7470	6	5	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0005	7489	6	6	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0006	7489	6	6	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0007	7489	5	0	0	5	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0008	7489	4	0	3	0	1	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0009	7489	3	3	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0010	7489	3	0	0	3	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0011	7469	3	0	0	3	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0012	7470	2	2	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0013	7472	2	2	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0014	7489	2	2	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0015	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0016	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0017	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0018	7489	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0019	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0020	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0021	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0022	7489	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0023	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0024	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0025	7469	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0026	7469	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0027	7489	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0028	7489	1	0	0	0	1	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0029	7489	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0030	7489	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0031	7489	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0032	7470	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0033	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0034	7489	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0035	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0036	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0037	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0038	7470	1	0	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0039	7472	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0040	7472	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0041	7470	1	0	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0042	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527