JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHM3_chr2_207816288_208030527	0/0	t0043	7489	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0044	7489	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0045	7489	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0046	7489	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0047	7489	1	0	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0048	7489	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0049	7489	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0050	7468	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0051	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0052	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0053	7468	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0054	7470	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0055	7470	1	0	0	0	0	1	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0056	7469	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0057	7469	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0058	7470	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	t0059	7472	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHN1_chr1_961482_980865	0/1	t0001	1341	153	6	37	78	8	23	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0002	1341	66	26	16	13	2	9	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0003	1341	44	7	2	33	2	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0004	1341	33	9	5	14	1	4	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	1/0	t0005	1341	16	13	2	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0006	1336	15	0	2	13	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0007	1341	15	3	12	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0008	1341	10	2	1	3	2	2	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0009	1336	6	2	0	4	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0010	1341	5	5	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0011	1341	4	2	2	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0012	1336	4	0	0	4	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0013	1341	3	3	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0014	1341	3	0	0	0	0	3	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0015	1341	3	0	0	0	0	3	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0016	1341	3	0	0	2	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0017	1341	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0018	1341	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0019	1341	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0020	1341	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0021	1341	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0022	1341	2	1	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0023	1341	2	1	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0024	1341	2	0	2	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0025	1341	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0026	1336	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0027	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0028	1341	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0029	1341	1	0	0	0	1	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0030	1341	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0031	1336	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0032	1336	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0033	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865