JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHN1_chr1_961482_980865	0/0	t0034	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0035	1336	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0036	1341	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0037	1309	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0038	1341	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0039	1336	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0040	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0041	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0042	1317	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0043	1341	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0044	1336	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	t0045	1341	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHO1_chr1_150144916_150165065	1/0	t0001	885	383	77	66	182	16	41	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0002	885	11	11	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/1	t0003	885	10	0	8	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0004	885	8	0	0	8	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0005	889	4	0	0	4	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0006	885	4	4	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0007	885	2	2	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0008	885	2	1	1	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0009	885	1	1	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	t0010	885	1	0	1	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO2_chr15_64836915_64873002	0/0	t0001	2217	95	14	12	60	0	9	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0002	2217	92	23	22	24	5	18	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	1/1	t0003	2217	66	11	24	12	5	12	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0004	2223	15	15	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0005	2217	7	0	0	0	0	7	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0006	2217	6	6	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0007	2217	6	6	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0008	2223	6	6	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0009	2217	4	4	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0010	2223	4	4	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0011	2217	3	3	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0012	2217	3	1	2	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0013	2217	3	0	0	3	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0014	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0015	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0016	2217	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0017	2217	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0018	2217	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0019	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0020	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0021	2217	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0022	2217	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0023	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0024	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	t0025	2217	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHS1_chr10_113746682_113788429	1/0	t0001	2748	130	39	14	63	5	8	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/1	t0002	2511	95	5	23	58	4	4	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0003	2748	58	2	17	23	3	13	copy fasta	PLEKHS1	chr10	113746682	113788429