JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHS1_chr10_113746682_113788429	0/0	t0004	2496	33	0	8	13	4	8	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0005	2733	10	0	6	4	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0006	2748	7	0	0	7	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0007	2749	6	1	2	2	0	1	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0008	2733	5	0	0	5	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0009	2749	5	4	1	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0010	2748	5	0	0	5	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0011	2511	5	3	2	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0012	2733	4	4	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0013	2751	3	3	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0014	2511	3	3	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0015	2748	2	0	2	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0016	2748	2	1	1	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0017	2749	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0018	2748	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0019	2748	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0020	2748	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0021	2748	2	0	0	0	0	2	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0022	2512	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0023	2751	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0024	2748	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0025	2749	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0026	2748	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0027	2733	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0028	2763	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0029	2763	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0030	2719	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0031	2747	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0032	2748	1	0	0	0	0	1	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0033	2748	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0034	2511	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0035	2511	1	0	1	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0036	2511	1	0	0	0	0	1	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0037	2481	1	0	1	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0038	2496	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	t0039	2496	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEK_chr2_68360282_68402453	0/0	t0001	1707	157	39	35	63	5	15	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0002	1705	79	14	12	36	5	12	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	1/1	t0003	1708	53	3	13	23	4	8	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0004	1705	44	20	9	10	3	2	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0005	1708	13	5	4	4	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0006	1708	5	5	0	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0007	1705	4	4	0	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0008	1707	3	0	0	2	1	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0009	1708	2	2	0	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0010	1708	2	0	2	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0011	1705	1	0	1	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0012	1705	1	1	0	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0013	1705	1	1	0	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0014	1705	1	0	1	0	0	0	copy fasta	PLEK	chr2	68360282	68402453