JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEK_chr2_68360282_68402453	0/0	t0015	1708	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0016	1708	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0017	1707	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0018	1707	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0019	1707	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0020	1707	1	0	1	0	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0021	1706	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	t0022	1706	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLET1_chr11_112243153_112265860	1/1	t0001	918	351	89	65	139	12	44	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0002	918	7	0	5	0	0	2	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0003	918	2	0	0	2	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0004	918	2	2	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0005	918	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0006	918	1	0	0	1	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0007	918	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0008	918	1	0	0	1	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0009	918	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	t0010	918	1	0	0	1	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLGLB1_chr2_87005224_87026844	0/0	t0001	2958	135	3	39	62	8	23	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0002	2963	93	2	6	70	2	13	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0003	2958	18	0	0	17	0	1	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0004	2958	13	4	2	3	2	2	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0005	2958	10	9	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0006	2958	7	0	5	2	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0007	2958	5	0	0	5	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0008	2958	5	1	0	4	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0009	2959	4	0	0	4	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0010	2963	4	0	0	3	0	1	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0011	2958	4	4	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0012	2958	4	0	0	0	0	4	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0013	2958	3	0	0	3	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0014	2961	3	0	0	3	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0015	2962	3	2	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0016	2963	2	0	0	2	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0017	2963	2	0	0	2	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0018	2957	2	2	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0019	2958	2	0	0	2	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0020	2963	2	0	0	2	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0021	2958	2	2	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0022	2956	2	1	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0023	2957	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0024	2959	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0025	2958	1	0	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0026	2958	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0027	2958	1	0	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0028	2963	1	0	0	0	0	1	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0029	2963	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0030	2964	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0031	2963	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0032	2959	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844