JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLGLB1_chr2_87005224_87026844	0/0	t0033	2958	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0034	2959	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0035	2958	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0036	2958	1	0	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0037	2959	1	0	1	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0038	2959	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0039	2959	1	0	0	0	0	1	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0040	2957	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0041	2958	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0042	2957	1	0	0	1	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0043	2958	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0044	2958	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	t0045	2957	1	1	0	0	0	0	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB2_chr2_87743087_87764476	0/1	t0001	2725	240	42	43	117	7	30	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0002	2725	17	0	8	0	5	4	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0003	2725	9	8	1	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0004	2725	5	0	2	3	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0005	2725	4	0	0	0	0	4	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0006	2725	3	0	3	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0007	2725	3	1	1	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0008	2726	3	0	0	2	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0009	2726	2	2	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0010	2725	2	0	0	1	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0011	2729	2	1	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0012	2720	2	0	1	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0013	2726	2	0	1	0	1	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0014	2725	1	0	0	0	1	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0015	2730	1	0	1	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0016	2729	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0017	2729	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0018	2720	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0019	2720	1	0	0	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0020	2725	1	1	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0021	2725	1	0	1	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0022	2725	1	0	0	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0023	2725	1	1	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0024	2726	1	0	0	0	1	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0025	2725	1	0	0	0	1	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0026	2725	1	1	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0027	2726	1	0	1	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0028	2725	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0029	2725	1	0	1	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0030	2725	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0031	2725	1	0	0	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	t0032	2729	1	1	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGRKT_chr9_5352971_5442925	1/1	t0001	538	405	88	74	187	12	42	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	t0002	538	4	3	1	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	t0003	538	3	2	1	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	t0004	538	1	1	0	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	t0005	538	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925