JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLG_chr6_160697244_160759097	0/1	t0001	1097	261	31	46	143	8	32	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	1/0	t0002	1098	27	7	10	1	2	6	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0003	1098	23	1	16	0	3	3	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0004	1098	13	10	3	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0005	1098	11	11	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0006	1097	10	0	0	10	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0007	1097	10	9	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0008	1098	6	6	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0009	1097	5	5	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0010	1098	3	3	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0011	1098	2	2	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0012	1098	2	0	1	0	1	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0013	1098	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0014	1098	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0015	1098	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0016	1098	1	0	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0017	1097	1	0	0	1	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0018	1097	1	0	0	0	0	1	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0019	1097	1	0	0	1	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0020	1097	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0021	1097	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0022	1097	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	t0023	1097	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLIN1_chr15_89659367_89684367	1/1	t0001	1348	268	54	52	120	14	26	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0002	1348	144	2	28	86	4	24	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0003	1348	18	17	1	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0004	1348	4	4	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0005	1348	3	0	0	3	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0006	1348	3	3	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0007	1347	3	3	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0008	1347	3	3	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0009	1347	3	1	2	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0010	1348	2	0	0	2	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0011	1348	2	2	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0012	1348	2	2	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0013	1348	1	0	1	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0014	1348	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0015	1348	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0016	1348	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	t0017	1348	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN2_chr9_19110761_19132492	1/0	t0001	584	254	62	34	134	6	17	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0002	584	157	16	29	79	8	25	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0003	584	19	6	7	0	2	4	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0004	584	7	1	2	0	2	2	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0005	584	3	0	0	3	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0006	584	2	2	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0007	584	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0008	584	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/1	t0009	584	1	0	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0010	584	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492