JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLIN2_chr9_19110761_19132492	0/0	t0011	584	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	t0012	584	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN3_chr19_4833341_4872667	0/1	t0001	928	311	70	62	131	13	34	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0002	925	82	0	15	60	1	6	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	1/0	t0003	928	19	8	0	4	2	4	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0004	927	11	9	2	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0005	929	9	5	2	2	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0006	928	4	0	1	1	0	2	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0007	928	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0008	929	1	0	0	0	0	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0009	925	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0010	928	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0011	928	1	0	0	0	0	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0012	927	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0013	928	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0014	917	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0015	925	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	t0016	927	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN4_chr19_4497192_4523486	0/0	t0001	2387	115	20	37	41	4	13	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/1	t0002	2387	82	3	20	51	3	4	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	1/0	t0003	2387	78	1	7	58	0	11	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0004	2387	73	40	8	9	7	9	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0005	2387	9	0	0	6	0	3	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0006	2387	6	5	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0007	2391	5	0	3	0	1	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0008	2387	5	5	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0009	2387	5	4	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0010	2387	3	0	2	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0011	2387	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0012	2387	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0013	2387	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0014	2391	2	0	2	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0015	2387	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0016	2387	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0017	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0018	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0019	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0020	2387	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0021	2387	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0022	2387	1	0	0	0	1	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0023	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0024	2387	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0025	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0026	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0027	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0028	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0029	2387	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0030	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0031	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0032	2387	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486