Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP10D_chr4_47480275_47598486	1/0	t0001	2388	107	20	27	28	7	24	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0002	2387	40	7	5	20	1	7	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/1	t0003	2387	32	1	6	22	0	2	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0004	2388	30	7	3	18	0	2	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0005	2388	29	21	3	3	1	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0006	2388	23	1	13	4	4	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0007	2387	20	1	3	15	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0008	2388	20	20	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0009	2388	17	12	3	0	1	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0010	2387	5	0	2	2	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0011	2388	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0012	2388	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0013	2387	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0014	2387	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0015	2388	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0016	2388	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	t0017	2388	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP11A_chr13_112685038_112892168	0/0	t0001	5681	82	8	22	29	4	19	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/1	t0002	5681	28	4	4	10	2	7	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0003	5618	9	9	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0004	5679	9	9	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0005	5614	8	0	5	2	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0006	5616	8	0	6	0	0	2	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0007	5684	6	0	1	4	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0008	5616	5	3	0	0	2	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0009	5678	5	0	4	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0010	5675	5	0	0	5	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0011	5681	5	0	0	5	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0012	5614	4	0	0	4	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0013	5614	3	3	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0014	5680	3	3	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0015	5680	3	3	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0016	5684	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0017	5678	2	0	0	2	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0018	5621	2	0	0	2	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0019	5621	2	0	0	2	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0020	5681	2	0	1	0	1	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0021	5682	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0022	5681	2	0	0	2	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0023	5678	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0024	5683	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0025	5684	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0026	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0027	5616	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0028	5616	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0029	5616	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0030	5676	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0031	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0032	5682	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0033	5681	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168