JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLIN4_chr19_4497192_4523486	0/0	t0033	2375	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0034	2387	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	t0035	2375	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN5_chr19_4517531_4540224	1/0	t0001	1079	222	43	40	104	8	26	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/1	t0002	1078	122	7	36	54	7	17	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0003	1081	20	19	1	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0004	1079	15	7	5	0	1	2	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0005	1078	6	6	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0006	1078	4	4	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0007	1077	3	0	0	0	0	3	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0008	1077	3	3	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0009	1079	2	2	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0010	1078	2	2	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0011	1081	2	0	0	2	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0012	1079	2	2	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0013	1078	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0014	1079	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0015	1078	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0016	1079	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0017	1079	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0018	1079	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0019	1078	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0020	1078	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	t0021	1044	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLK1_chr16_23673889_23695367	1/1	t0001	349	199	53	39	79	6	20	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0002	349	100	10	8	67	3	12	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0003	349	26	7	12	2	1	4	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0004	349	8	0	0	8	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0005	349	6	6	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0006	349	6	1	5	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0007	349	4	4	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0008	349	3	0	0	3	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0009	349	1	0	0	1	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	t0010	349	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK2_chr5_58448982_58465086	0/0	t0001	729	175	32	36	86	4	17	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/1	t0002	729	143	53	28	40	9	12	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	1/0	t0003	729	43	0	6	22	2	12	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0004	729	15	0	2	5	3	5	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0005	729	4	3	1	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0006	729	3	0	3	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0007	729	2	0	0	2	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0008	729	1	0	0	0	0	1	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0009	729	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0010	729	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0011	729	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	t0012	729	1	0	0	0	0	1	copy fasta	PLK2	chr5	58448982	58465086
PLK3_chr1_44795377_44810990	1/1	t0001	400	383	86	62	169	16	48	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	t0002	400	1	0	0	1	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK4_chr4_127875893_127904224	1/1	t0001	926	355	87	53	177	14	22	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	t0002	926	3	0	3	0	0	0	copy fasta	PLK4	chr4	127875893	127904224