JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLK4_chr4_127875893_127904224	0/0	t0003	926	2	0	0	0	0	2	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	t0004	926	1	1	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	t0005	926	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	t0006	926	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	t0007	926	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK5_chr19_1519077_1541046	0/0	t0001	1510	92	5	15	63	0	9	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/1	t0002	1510	43	6	27	1	2	6	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	1/0	t0003	1510	36	0	9	11	8	7	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0004	1510	31	0	0	28	2	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0005	1510	26	0	1	24	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0006	1510	26	0	0	19	0	7	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0007	1510	18	1	2	13	1	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0008	1510	11	11	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0009	1510	10	8	0	0	1	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0010	1510	9	8	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0011	1510	8	0	4	1	0	3	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0012	1510	6	0	0	6	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0013	1510	5	0	0	5	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0014	1510	5	0	1	3	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0015	1510	5	2	1	0	0	2	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0016	1510	4	4	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0017	1510	4	4	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0018	1510	4	0	1	0	0	3	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0019	1510	4	4	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0020	1510	4	0	3	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0021	1510	3	0	1	0	2	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0022	1510	3	0	0	3	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0023	1510	3	0	1	0	0	2	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0024	1510	3	0	0	3	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0025	1508	3	3	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0026	1508	3	3	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0027	1508	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0028	1510	2	0	0	2	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0029	1508	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0030	1510	2	0	2	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0031	1510	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0032	1510	2	0	2	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0033	1510	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0034	1508	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0035	1508	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0036	1509	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0037	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0038	1511	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0039	1511	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0040	1511	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0041	1510	1	0	0	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0042	1510	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0043	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0044	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0045	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046