JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLK5_chr19_1519077_1541046	0/0	t0046	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0047	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0048	1508	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0049	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0050	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0051	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0052	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0053	1510	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0054	1510	1	0	0	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0055	1510	1	0	0	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0056	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0057	1511	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0058	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0059	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0060	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0061	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0062	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0063	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0064	1510	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0065	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0066	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0067	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0068	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0069	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0070	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0071	1510	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0072	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0073	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0074	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0075	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0076	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0077	1508	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	t0078	1510	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLLP_chr16_57251097_57289672	1/0	t0001	949	297	80	71	105	13	27	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/1	t0002	949	37	7	0	26	2	1	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0003	949	19	0	1	7	0	11	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0004	949	6	0	0	6	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0005	949	3	0	1	0	0	2	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0006	949	3	3	0	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0007	949	2	0	1	0	1	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0008	949	2	0	0	0	0	2	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	t0009	949	1	0	0	0	0	1	copy fasta	PLLP	chr16	57251097	57289672
PLN_chr6_118543296_118566716	1/0	t0001	2831	153	22	28	80	6	16	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/1	t0002	2831	120	30	16	50	5	18	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0003	2831	50	6	24	10	4	6	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0004	2831	10	10	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0005	2831	8	5	1	2	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0006	2831	6	0	0	6	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0007	2829	6	6	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0008	2831	4	0	2	0	0	2	copy fasta	PLN	chr6	118543296	118566716