JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLN_chr6_118543296_118566716	0/0	t0009	2831	4	4	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0010	2831	3	3	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0011	2831	2	0	1	0	1	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0012	2831	2	2	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0013	2831	2	0	0	2	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0014	2831	2	2	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0015	2829	2	2	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0016	2831	1	0	0	1	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0017	2831	1	0	0	0	1	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0018	2831	1	0	1	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0019	2831	1	0	0	0	1	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0020	2831	1	0	1	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0021	2831	1	0	0	1	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0022	2831	1	1	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0023	2831	1	0	0	1	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0024	2831	1	0	0	1	0	0	copy fasta	PLN	chr6	118543296	118566716
PLN_chr6_118543296_118566716	0/0	t0025	2829	1	1	0	0	0	0	copy fasta	PLN	chr6	118543296	118566716
PLOD1_chr1_11929717_11980537	1/1	t0001	793	343	75	60	160	10	36	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0002	793	22	11	3	7	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0003	793	9	8	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0004	793	3	3	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0005	793	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0006	793	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	t0007	793	1	0	0	0	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD2_chr3_146064440_146166184	1/1	t0001	1473	146	40	27	54	6	17	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0002	1473	146	46	27	60	3	10	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0003	1473	59	4	10	42	1	2	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0004	1473	6	0	2	0	2	2	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0005	1473	3	0	0	3	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0006	1473	1	0	0	1	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0007	1473	1	0	0	0	0	1	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0008	1473	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0009	1473	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0010	1473	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	t0011	1473	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD3_chr7_101200984_101222581	1/1	t0001	605	309	71	53	141	11	31	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0002	605	82	18	11	33	4	16	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0003	605	18	0	2	14	0	2	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0004	606	5	5	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0005	605	3	0	0	2	1	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0006	605	3	3	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0007	605	2	0	0	2	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0008	605	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0009	605	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0010	605	1	0	0	0	1	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0011	606	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0012	605	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	t0013	605	1	0	0	0	1	0	copy fasta	PLOD3	chr7	101200984	101222581
PLP1_chrX_103771840_103797619	1/1	t0001	2178	284	75	52	121	7	27	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0002	2178	7	0	2	5	0	0	copy fasta	PLP1	chrX	103771840	103797619