JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLP1_chrX_103771840_103797619	0/0	t0003	2177	5	0	0	3	2	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0004	2179	4	0	0	2	0	2	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0005	2178	3	0	0	3	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0006	2178	2	0	2	0	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0007	2178	2	0	0	2	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0008	2178	2	2	0	0	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0009	2178	1	0	0	0	0	1	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0010	2178	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0011	2178	1	0	1	0	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0012	2178	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0013	2178	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0014	2178	1	1	0	0	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0015	2177	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	t0016	2178	1	0	1	0	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP2_chrX_49166898_49180235	1/1	t0001	645	257	71	53	90	11	30	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	t0002	648	1	0	0	1	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	t0003	645	1	1	0	0	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	t0004	645	1	0	0	1	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLPBP_chr8_37757645_37784768	1/1	t0001	1680	238	71	44	85	9	27	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0002	1680	69	3	20	34	3	9	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0003	1680	12	1	0	10	0	1	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0004	1679	8	4	0	3	0	1	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0005	1681	3	3	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0006	1680	3	3	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0007	1681	2	0	0	2	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0008	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0009	1681	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0010	1680	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0011	1680	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0012	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0013	1713	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0014	1680	1	0	0	0	0	1	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0015	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0016	1680	1	0	0	0	0	1	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0017	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0018	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0019	1680	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	t0020	1679	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPP1_chr5_55419854_55539964	1/1	t0001	688	277	66	44	129	7	29	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0002	688	4	0	3	0	0	1	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0003	688	3	3	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0004	688	2	2	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0005	688	2	2	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0006	688	1	1	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0007	688	1	0	0	0	1	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0008	688	1	0	0	1	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0009	688	1	1	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0010	688	1	0	1	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	t0011	688	1	1	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP2_chr19_276043_296403	1/1	t0001	413	284	83	54	116	7	22	copy fasta	PLPP2	chr19	276043	296403