JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPP2_chr19_276043_296403	0/0	t0002	413	60	4	15	17	6	18	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0003	413	4	0	3	0	1	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0004	413	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0005	413	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0006	413	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0007	413	1	0	0	1	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0008	413	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	t0009	413	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP3_chr1_56489761_56584563	0/1	t0001	2338	133	38	18	59	6	11	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0002	2338	81	17	4	49	0	11	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0003	2338	44	21	10	5	5	3	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0004	2338	27	0	12	9	0	6	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0005	2338	14	0	6	4	0	4	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0006	2338	11	9	2	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0007	2338	9	8	1	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0008	2338	3	0	2	0	1	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0009	2338	3	2	1	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0010	2338	2	1	1	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0011	2338	1	0	0	0	0	1	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0012	2338	1	0	0	0	1	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0013	2357	1	0	0	0	1	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0014	2338	1	0	1	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0015	2328	1	0	0	1	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	1/0	t0016	2338	1	0	0	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0017	2338	1	1	0	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0018	2338	1	1	0	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	t0019	2338	1	0	0	1	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP4_chr10_120452227_120597065	0/0	t0001	2644	46	16	7	20	1	2	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0002	2645	31	2	1	28	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/1	t0003	2643	25	8	6	6	2	2	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0004	2642	22	10	7	0	1	4	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0005	2642	18	1	5	9	0	3	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0006	2644	15	7	1	7	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0007	2644	15	3	1	9	0	2	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0008	2642	13	1	2	7	0	3	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0009	2643	12	6	1	1	3	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0010	2642	11	4	6	0	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0011	2644	10	0	0	10	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0012	2645	9	0	1	7	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0013	2645	8	1	1	6	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0014	2645	7	0	0	7	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0015	2642	6	1	2	2	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0016	2643	5	4	1	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0017	2644	4	2	0	2	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0018	2642	4	0	1	2	1	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0019	2643	4	0	3	0	1	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0020	2642	4	0	0	4	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0021	2642	3	0	1	0	2	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0022	2645	3	0	1	2	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0023	2643	3	0	0	3	0	0	copy fasta	PLPP4	chr10	120452227	120597065