JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPP4_chr10_120452227_120597065	0/0	t0024	2643	3	3	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0025	2643	3	3	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0026	2644	3	0	0	0	0	3	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0027	2645	2	0	0	2	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0028	2642	2	0	1	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0029	2642	2	2	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0030	2643	2	2	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0031	2643	2	0	2	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0032	2642	2	2	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0033	2644	2	2	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0034	2641	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0035	2643	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0036	2644	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0037	2642	1	0	0	0	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0038	2644	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0039	2643	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0040	2642	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0041	2643	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0042	2642	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0043	2642	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	1/0	t0044	2643	1	0	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0045	2643	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0046	2643	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0047	2642	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0048	2643	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0049	2642	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0050	2643	1	0	1	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0051	2642	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0052	2641	1	0	0	0	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0053	2642	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0054	2643	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0055	2644	1	0	0	0	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0056	2641	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0057	2642	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0058	2642	1	0	0	0	1	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0059	2644	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	t0060	2641	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP5_chr8_38258130_38274224	1/1	t0001	1340	213	53	42	83	8	25	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0002	1340	102	10	21	62	6	3	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0003	1340	4	4	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0004	1340	1	0	0	1	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0005	1340	1	1	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0006	1340	1	0	1	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0007	1340	1	1	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	t0008	1340	1	1	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP6_chr9_4657294_4670258	1/1	t0001	2078	132	10	43	59	9	9	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0002	2078	99	31	9	53	0	6	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0003	2078	70	4	2	50	0	14	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0004	2078	51	16	11	19	1	4	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0005	2078	47	13	10	14	2	8	copy fasta	PLPP6	chr9	4657294	4670258