JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPP6_chr9_4657294_4670258	0/0	t0006	2078	20	0	3	15	1	1	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0007	2078	8	7	1	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0008	2078	6	0	4	0	2	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0009	2078	6	1	1	4	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0010	2077	5	0	0	5	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0011	2078	4	3	1	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0012	2078	3	0	0	3	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0013	2078	3	3	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0014	2078	3	3	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0015	2078	3	0	0	0	0	3	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0016	2078	2	0	0	0	0	2	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0017	2078	2	0	2	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0018	2078	2	2	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0019	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0020	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0021	2078	1	1	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0022	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0023	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0024	2078	1	1	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0025	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0026	2078	1	0	0	1	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0027	2078	1	0	0	0	0	1	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0028	2078	1	1	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0029	2078	1	0	0	0	1	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	t0030	2078	1	0	1	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP7_chr9_131284723_131314261	0/1	t0001	1250	189	27	31	98	9	23	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0002	1250	94	6	19	51	6	12	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	1/0	t0003	1250	74	48	10	8	0	7	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0004	1250	66	10	5	42	3	6	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0005	1250	6	4	2	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0006	1250	3	0	3	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0007	1250	2	1	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0008	1250	1	1	0	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0009	1250	1	1	0	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0010	1250	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0011	1250	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0012	1250	1	0	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0013	1250	1	0	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0014	1250	1	0	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0015	1250	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0016	1250	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	t0017	1250	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPPR1_chr9_101023727_101330135	0/1	t0001	1500	72	9	14	29	6	13	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0002	1504	55	27	6	15	3	4	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0003	1502	11	10	1	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0004	1504	9	3	2	4	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0005	1500	6	2	1	3	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0006	1505	6	3	2	0	1	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0007	1504	6	6	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0008	1501	4	4	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135