JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPPR1_chr9_101023727_101330135	0/0	t0009	1502	3	0	1	0	0	2	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0010	1504	3	3	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0011	1501	3	0	2	1	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0012	1493	2	2	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0013	1502	2	2	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0014	1502	2	1	0	0	0	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0015	1501	2	1	1	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0016	1505	2	1	1	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0017	1500	2	0	1	0	0	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0018	1500	2	0	1	0	0	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0019	1500	2	2	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0020	1492	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0021	1504	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0022	1499	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0023	1505	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0024	1499	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0025	1500	1	0	0	1	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0026	1500	1	0	0	1	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0027	1504	1	0	1	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	t0028	1501	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR2_chr19_11350432_11370698	1/0	t0001	1339	245	46	37	120	10	31	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/1	t0002	1339	134	36	35	48	6	8	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0003	1339	5	4	1	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0004	1339	3	3	0	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0005	1339	3	0	1	0	0	2	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0006	1339	1	0	0	1	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0007	1339	1	1	0	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0008	1339	1	0	0	0	0	1	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	t0009	1339	1	0	0	1	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR3_chr19_807488_826955	1/1	t0001	150	374	87	70	156	17	42	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	t0002	151	17	3	2	5	1	6	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	t0003	150	3	3	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	t0004	150	2	0	0	2	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	t0005	139	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	t0006	150	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR4_chr1_99259492_99314584	1/1	t0001	2677	319	68	69	138	10	32	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0002	2677	25	0	1	20	0	4	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0003	2676	10	10	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0004	2677	4	4	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0005	2677	4	4	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0006	2676	3	3	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0007	2677	2	0	0	2	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0008	2677	2	0	0	2	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0009	2677	2	0	0	0	0	2	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0010	2677	1	1	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0011	2677	1	0	1	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0012	2677	1	0	0	0	0	1	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0013	2677	1	0	1	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0014	2677	1	0	0	1	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0015	2677	1	0	0	1	0	0	copy fasta	PLPPR4	chr1	99259492	99314584