JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPPR4_chr1_99259492_99314584	0/0	t0016	2677	1	0	1	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0017	2677	1	0	0	0	0	1	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0018	2677	1	0	1	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0019	2677	1	0	0	1	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0020	2676	1	1	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0021	2677	1	1	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	t0022	2677	1	0	0	1	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR5_chr1_98885245_99009861	0/0	t0001	3018	33	5	12	4	3	9	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0002	3018	25	1	3	18	1	2	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0003	3018	25	6	0	18	0	1	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0004	3018	18	2	4	9	1	2	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0005	3018	17	5	4	8	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0006	3014	15	1	6	1	1	6	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0007	3017	15	8	0	0	1	6	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0008	3018	13	0	11	0	0	2	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	1/0	t0009	3018	11	7	0	1	0	2	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0010	3018	9	0	2	7	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0011	3018	7	7	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/1	t0012	3018	6	3	1	1	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0013	3014	5	5	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0014	3018	5	2	2	0	1	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0015	3014	4	1	0	2	0	1	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0016	3014	4	0	0	4	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0017	3017	4	2	2	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0018	3018	4	0	0	4	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0019	3014	3	0	0	3	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0020	3018	3	0	0	3	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0021	3018	3	1	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0022	3018	3	3	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0023	3018	2	0	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0024	3018	2	0	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0025	3018	2	0	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0026	3018	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0027	3018	2	0	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0028	3018	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0029	3018	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0030	3018	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0031	3018	2	0	0	2	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0032	3018	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0033	3013	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0034	3017	2	0	2	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0035	3017	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0036	3017	2	2	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0037	3014	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0038	3014	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0039	3018	1	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0040	3018	1	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0041	3018	1	0	0	0	0	1	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0042	3018	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0043	3018	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861