Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP11A_chr13_112685038_112892168	0/0	t0034	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0035	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0036	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0037	5680	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0038	5621	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0039	5621	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0040	5684	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	1/0	t0041	5682	1	0	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0042	5684	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0043	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0044	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0045	5683	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0046	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0047	5618	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0048	5618	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0049	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0050	5680	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0051	5618	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0052	5679	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0053	5684	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0054	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0055	5681	1	0	0	0	1	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0056	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0057	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0058	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0059	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0060	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0061	5681	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0062	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0063	5678	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0064	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0065	5679	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0066	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0067	5684	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0068	5680	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0069	5678	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0070	5680	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0071	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0072	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0073	5681	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0074	5679	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0075	5680	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0076	5681	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	t0077	5681	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11B_chr3_182788504_182926629	0/1	t0001	3782	107	18	19	60	2	7	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	1/0	t0002	3782	80	15	3	50	3	8	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0003	3782	48	10	10	25	1	2	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0004	3782	31	13	7	4	5	2	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0005	3782	11	9	2	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0006	3782	11	0	3	7	1	0	copy fasta	ATP11B	chr3	182788504	182926629