JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLPPR5_chr1_98885245_99009861	0/0	t0044	3019	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0045	3019	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0046	3018	1	0	0	1	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0047	3018	1	0	0	1	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0048	3018	1	0	0	1	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0049	3018	1	0	0	0	0	1	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0050	3018	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0051	3018	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0052	3019	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0053	3018	1	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0054	3017	1	0	0	0	0	1	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0055	3017	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	t0056	3017	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLRG1_chr4_154530005_154555400	0/1	t0001	1774	140	15	16	93	3	12	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0002	1774	87	3	28	39	5	12	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0003	1774	65	4	16	27	5	13	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	1/0	t0004	1773	39	4	11	9	3	11	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0005	1774	12	0	0	12	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0006	1773	11	11	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0007	1774	10	10	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0008	1774	9	3	4	0	0	2	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0009	1774	9	9	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0010	1774	8	8	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0011	1770	8	8	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0012	1773	8	7	1	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0013	1771	5	5	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0014	1774	5	5	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0015	1774	2	0	0	2	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0016	1774	2	0	2	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0017	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0018	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0019	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0020	1774	1	0	0	1	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0021	1774	1	0	1	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0022	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0023	1773	1	0	0	1	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0024	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0025	1773	1	0	1	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	t0026	1774	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLS1_chr3_142591393_142718664	1/1	t0001	1811	183	27	37	90	9	18	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0002	1811	31	25	3	1	0	2	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0003	1811	18	6	3	8	1	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0004	1811	8	8	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0005	1809	7	7	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0006	1811	5	4	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0007	1810	4	0	4	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0008	1811	3	3	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0009	1811	3	2	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0010	1811	3	0	0	3	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0011	1811	2	0	2	0	0	0	copy fasta	PLS1	chr3	142591393	142718664