JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLS1_chr3_142591393_142718664	0/0	t0012	1811	2	2	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0013	1811	1	0	0	1	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0014	1811	1	0	0	1	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0015	1811	1	0	0	0	1	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0016	1811	1	0	0	1	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0017	1811	1	0	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0018	1811	1	0	0	0	1	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	t0019	1811	1	0	0	1	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS3_chrX_115556174_115655861	0/1	t0001	1396	146	50	28	42	4	21	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	1/0	t0002	1396	102	22	16	55	3	5	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	t0003	1394	3	0	3	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	t0004	1396	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	t0005	1396	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	t0006	1396	1	0	0	1	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLSCR1_chr3_146510180_146549607	1/1	t0001	1020	272	56	62	108	16	28	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0002	1020	61	29	2	20	2	8	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0003	1020	5	5	0	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0004	1020	1	1	0	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0005	1020	1	0	0	0	0	1	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0006	1020	1	0	0	0	0	1	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	t0007	1020	1	1	0	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR2_chr3_146428288_146474561	1/1	t0001	511	175	44	26	84	8	11	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0002	511	86	12	15	45	2	12	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0003	511	84	9	17	47	2	9	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0004	511	14	14	0	0	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0005	511	2	0	0	0	0	2	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0006	511	1	0	0	1	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0007	511	1	0	0	1	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	t0008	511	1	1	0	0	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR3_chr17_7384727_7399525	1/0	t0001	865	223	40	40	129	3	10	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/1	t0002	865	173	44	39	50	12	27	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0003	866	22	1	3	15	0	3	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0004	866	14	0	1	11	1	1	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0005	865	6	1	4	0	0	1	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0006	865	6	5	1	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0007	865	3	3	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0008	865	2	2	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0009	866	2	2	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0010	865	1	0	0	1	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0011	865	1	0	0	1	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	t0012	865	1	0	0	1	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR4_chr3_146187335_146256105	0/0	t0001	2243	115	13	26	58	4	14	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	1/1	t0002	2244	57	1	13	31	0	10	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0003	2243	38	9	11	9	4	5	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0004	2243	35	1	5	28	0	1	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0005	2242	28	0	0	24	2	2	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0006	2243	17	10	2	1	0	4	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0007	2243	16	5	1	9	0	1	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0008	2243	9	0	7	0	0	2	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0009	2242	8	7	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105