JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLSCR4_chr3_146187335_146256105	0/0	t0010	2243	8	8	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0011	2242	7	6	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0012	2242	6	6	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0013	2243	6	6	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0014	2243	4	4	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0015	2243	4	3	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0016	2243	2	2	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0017	2243	2	0	0	2	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0018	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0019	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0020	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0021	2242	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0022	2242	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0023	2244	1	0	0	0	0	1	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0024	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0025	2244	1	0	0	1	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0026	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0027	2242	1	0	0	1	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0028	2243	1	0	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0029	2243	1	0	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0030	2244	1	0	0	1	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0031	2243	1	0	0	1	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0032	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0033	2244	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0034	2242	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	t0035	2243	1	1	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR5_chr3_146580837_146610346	1/0	t0001	285	320	74	48	160	11	26	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/1	t0002	284	92	17	14	34	6	20	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	t0003	284	3	3	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	t0004	284	1	0	0	0	1	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLTP_chr20_45893622_45917155	1/1	t0001	408	432	94	72	206	12	46	copy fasta	PLTP	chr20	45893622	45917155
PLVAP_chr19_17346455_17382342	0/0	t0001	962	234	28	51	116	15	24	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0002	962	111	44	14	29	2	22	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	1/0	t0003	962	48	5	5	35	0	2	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0004	962	20	8	5	5	1	1	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0005	962	4	1	2	0	0	1	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0006	962	3	3	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/1	t0007	962	3	1	1	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0008	962	2	2	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0009	930	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0010	962	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0011	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0012	962	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0013	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0014	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0015	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0016	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0017	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0018	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	t0019	962	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342