JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXDC1_chr17_39058313_39156637	1/1	t0001	4728	52	0	3	38	1	8	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0002	4727	45	1	19	15	2	8	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0003	4727	30	22	4	2	1	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0004	4726	22	7	6	4	1	4	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0005	4727	17	0	3	14	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0006	4727	15	1	6	1	2	5	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0007	4727	11	0	0	11	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0008	4727	10	0	4	6	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0009	4727	9	1	2	1	1	4	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0010	4726	8	1	4	0	0	3	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0011	4726	8	0	0	7	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0012	4728	8	0	0	7	1	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0013	4727	5	0	0	5	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0014	4726	5	5	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0015	4727	5	0	0	4	1	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0016	4726	4	3	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0017	4727	4	4	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0018	4727	4	0	1	3	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0019	4728	3	3	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0020	4727	3	0	0	3	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0021	4727	3	0	0	0	2	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0022	4727	3	3	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0023	4727	3	0	1	2	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0024	4727	2	2	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0025	4726	2	2	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0026	4726	2	2	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0027	4727	2	2	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0028	4727	2	0	0	2	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0029	4726	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0030	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0031	4726	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0032	4727	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0033	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0034	4726	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0035	4727	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0036	4727	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0037	4727	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0038	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0039	4728	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0040	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0041	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0042	4728	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0043	4728	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0044	4728	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0045	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0046	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0047	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0048	4728	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0049	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0050	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637