JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXDC1_chr17_39058313_39156637	0/0	t0051	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0052	4728	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0053	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0054	4727	1	0	1	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0055	4726	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0056	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0057	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0058	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0059	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0060	4727	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	t0061	4727	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC2_chr10_19811432_20294856	0/0	t0001	10690	6	5	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0002	10692	5	0	0	4	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0003	10690	5	0	3	0	0	2	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0004	10687	5	3	0	2	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0005	10692	4	0	3	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0006	10690	4	4	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0007	10692	4	1	0	1	0	2	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0008	10707	3	0	1	0	1	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0009	10705	3	0	0	3	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0010	10691	3	2	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0011	10687	2	2	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0012	10696	2	0	0	2	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0013	10690	2	0	0	0	0	2	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0014	10686	2	0	1	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0015	10690	2	0	2	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0016	10714	2	0	2	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0017	10691	2	2	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0018	10708	2	0	1	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0019	10687	2	2	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0020	10686	2	0	2	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0021	10687	2	1	0	0	1	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0022	10707	2	0	0	1	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0023	10705	2	0	1	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/1	t0024	10692	2	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0025	10690	2	0	0	1	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0026	10690	2	2	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0027	10690	2	1	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0028	10708	2	2	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0029	10691	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0030	10690	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0031	10691	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0032	10692	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0033	10683	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0034	10692	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0035	10694	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0036	10696	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0037	10677	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0038	10696	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0039	10716	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856