JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXDC2_chr10_19811432_20294856	0/0	t0090	10693	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0091	10689	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0092	10688	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0093	10683	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0094	10688	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0095	10683	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0096	10683	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0097	10685	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0098	10687	1	0	0	0	1	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0099	10685	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0100	10687	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0101	10689	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0102	10685	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0103	10714	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0104	10712	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0105	10711	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	1/0	t0106	10686	1	0	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0107	10703	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0108	10720	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0109	10707	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0110	10696	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0111	10706	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0112	10694	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0113	10690	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0114	10688	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0115	10686	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0116	10690	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0117	10691	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0118	10690	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0119	10691	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0120	10691	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0121	10686	1	0	0	1	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0122	10720	1	0	0	0	0	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0123	10692	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0124	10704	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0125	10691	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0126	10690	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0127	10694	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0128	10689	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0129	10691	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	t0130	10714	1	1	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXNA1_chr3_126978115_127042389	1/1	t0001	3619	140	21	34	62	6	15	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0002	3619	40	3	0	30	1	6	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0003	3619	24	22	2	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0004	3619	23	5	1	11	1	5	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0005	3619	21	1	2	16	2	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0006	3619	9	0	5	1	0	3	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0007	3620	6	0	5	0	1	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0008	3619	6	0	0	6	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0009	3619	6	4	0	2	0	0	copy fasta	PLXNA1	chr3	126978115	127042389