JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXNA1_chr3_126978115_127042389	0/0	t0010	3619	6	0	0	6	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0011	3619	5	1	2	0	1	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0012	3619	5	3	1	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0013	3619	4	2	2	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0014	3619	4	4	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0015	3619	4	4	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0016	3619	4	0	0	4	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0017	3619	2	2	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0018	3620	2	0	2	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0019	3619	2	2	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0020	3619	2	2	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0021	3619	2	0	0	2	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0022	3619	2	0	0	1	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0023	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0024	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0025	3619	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0026	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0027	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0028	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0029	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0030	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0031	3619	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0032	3619	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0033	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0034	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0035	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0036	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0037	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0038	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0039	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0040	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0041	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0042	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0043	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0044	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0045	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0046	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0047	3619	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0048	3619	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	t0049	3619	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA2_chr1_208017242_208249384	0/0	t0001	5819	22	5	6	9	0	2	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0002	5820	20	11	7	0	1	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0003	5818	14	2	5	7	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0004	5820	14	1	7	0	3	3	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0005	5819	11	0	0	8	0	3	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0006	5819	11	0	1	5	0	5	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0007	5818	10	10	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0008	5818	9	0	2	6	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0009	5819	9	0	3	6	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0010	5819	8	1	3	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384