JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXNA2_chr1_208017242_208249384	0/0	t0011	5820	6	6	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0012	5819	6	0	0	6	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0013	5819	6	0	0	6	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0014	5818	5	5	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0015	5819	5	1	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0016	5819	4	4	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0017	5819	4	0	2	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0018	5818	4	0	1	1	1	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0019	5819	4	0	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0020	5819	4	0	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0021	5819	4	0	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0022	5819	4	0	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0023	5819	3	3	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0024	5819	3	3	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0025	5819	3	0	0	3	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0026	5819	3	3	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0027	5818	3	0	0	2	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0028	5819	3	0	1	0	1	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0029	5819	3	0	0	3	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0030	5819	3	0	1	1	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0031	5819	3	3	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0032	5818	3	0	1	1	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0033	5819	3	0	0	2	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0034	5819	3	0	0	3	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0035	5819	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0036	5819	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0037	5821	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0038	5819	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0039	5818	2	0	0	1	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0040	5818	2	1	0	0	1	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0041	5819	2	0	1	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/1	t0042	5818	2	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0043	5818	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0044	5818	2	0	1	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0045	5820	2	1	0	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0046	5820	2	0	2	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0047	5818	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	1/0	t0048	5824	2	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0049	5819	2	0	1	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0050	5819	1	0	0	0	1	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0051	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0052	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0053	5818	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0054	5820	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0055	5820	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0056	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0057	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0058	5818	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0059	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	t0060	5819	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384