Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP11B_chr3_182788504_182926629	0/0	t0007	3781	7	6	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0008	3782	6	0	5	0	0	1	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0009	3782	5	5	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0010	3782	3	3	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0011	3782	2	0	0	2	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0012	3782	2	0	0	1	1	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0013	3782	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0014	3782	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0015	3792	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0016	3782	1	0	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0017	3782	1	1	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0018	3782	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0019	3782	1	1	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0020	3782	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0021	3782	1	0	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0022	3782	1	1	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	t0023	3782	1	0	0	0	1	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11C_chrX_139721348_139938053	0/1	t0001	3630	105	15	26	44	4	15	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0002	3630	42	2	4	34	1	1	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	1/0	t0003	3630	18	15	2	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0004	3631	15	12	3	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0005	3630	7	0	3	4	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0006	3630	5	0	0	5	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0007	3630	5	5	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0008	3631	3	3	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0009	3631	3	0	0	2	1	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0010	3631	3	0	1	1	0	1	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0011	3630	2	2	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0012	3629	2	0	0	2	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0013	3630	2	1	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0014	3631	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0015	3630	1	0	0	0	1	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0016	3632	1	0	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0017	3630	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0018	3630	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0019	3630	1	0	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0020	3630	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0021	3630	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0022	3630	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0023	3631	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0024	3630	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0025	3630	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0026	3630	1	0	0	0	0	1	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0027	3631	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0028	3631	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0029	3631	1	0	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0030	3632	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0031	3631	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0032	3630	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0033	3631	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053