JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXNA2_chr1_208017242_208249384	0/0	t0111	5818	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA3_chrX_154453281_154482779	0/1	t0001	5266	60	0	18	30	4	7	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0002	5266	18	3	7	6	0	2	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0003	5270	16	0	3	4	1	8	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0004	5267	16	1	4	11	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0005	5270	8	7	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0006	5268	6	6	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0007	5267	6	0	0	3	0	3	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0008	5269	5	4	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0009	5272	5	1	2	1	0	1	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0010	5265	5	1	0	4	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0011	5266	3	0	0	3	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0012	5267	3	0	0	3	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0013	5267	3	1	0	1	0	1	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0014	5270	3	3	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0015	5271	3	3	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0016	5271	3	2	0	0	0	1	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0017	5267	3	0	0	1	2	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0018	5269	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0019	5269	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0020	5271	2	0	0	2	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0021	5270	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0022	5270	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0023	5271	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0024	5271	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0025	5272	2	0	0	2	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0026	5271	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0027	5265	2	0	2	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0028	5265	2	0	0	0	2	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0029	5267	2	0	0	1	1	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0030	5265	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0031	5265	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0032	5265	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0033	5266	1	0	0	0	1	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0034	5266	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0035	5266	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0036	5266	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0037	5266	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0038	5269	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0039	5268	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0040	5270	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0041	5273	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0042	5272	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0043	5271	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0044	5270	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0045	5273	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0046	5274	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0047	5252	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0048	5273	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0049	5271	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779