JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXNA3_chrX_154453281_154482779	0/0	t0100	5266	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	t0101	5267	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA4_chr7_132118340_132581470	0/0	t0001	7265	19	1	4	9	1	4	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0002	7261	14	0	5	1	0	8	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0003	7263	10	8	2	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0004	7264	6	1	3	0	1	1	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0005	7275	4	4	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0006	7276	4	3	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0007	7288	4	4	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0008	7275	4	0	1	1	0	2	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	1/0	t0009	7275	3	0	2	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0010	7263	3	0	0	3	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0011	7275	2	2	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0012	7260	2	2	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0013	7264	2	2	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0014	7279	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0015	7279	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0016	7276	1	0	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0017	7276	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0018	7286	1	0	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0019	7261	1	0	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0020	7262	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/1	t0021	7263	1	0	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0022	7278	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0023	7265	1	0	0	0	0	1	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	t0024	7264	1	0	1	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNB1_chr3_48398854_48435086	1/1	t0001	771	298	71	61	122	14	28	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	t0002	771	7	5	2	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	t0003	771	6	6	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	t0004	771	5	0	0	5	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	t0005	771	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	t0006	771	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB2_chr22_50269979_50312646	0/0	t0001	893	145	33	38	53	6	15	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/1	t0002	893	114	12	17	57	5	22	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0003	894	25	24	1	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0004	893	4	4	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0005	893	3	0	0	2	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	1/0	t0006	893	2	0	0	0	1	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0007	893	2	2	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0008	893	2	2	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0009	893	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0010	876	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0011	893	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0012	893	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	t0013	893	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB3_chrX_153759249_153784341	1/1	t0001	424	291	69	54	121	11	34	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0002	424	6	6	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0003	424	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0004	424	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0005	424	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341