JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLXNB3_chrX_153759249_153784341	0/0	t0006	421	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0007	425	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0008	424	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0009	438	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0010	423	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0011	425	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0012	425	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	t0013	424	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNC1_chr12_94143577_94312675	0/0	t0001	2786	193	56	32	72	7	26	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/1	t0002	2786	41	6	11	14	4	5	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0003	2787	16	11	5	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0004	2786	16	2	1	11	0	2	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0005	2789	9	0	8	0	1	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0006	2787	6	0	1	2	0	3	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0007	2786	2	0	0	2	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0008	2786	2	2	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0009	2787	2	2	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	1/0	t0010	2786	2	0	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0011	2787	2	0	1	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0012	2786	1	0	0	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0013	2787	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0014	2786	1	0	0	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0015	2786	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0016	2786	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0017	2786	1	0	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	t0018	2787	1	0	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXND1_chr3_129550214_129611676	1/0	t0001	1136	234	53	46	85	14	35	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0002	1136	64	5	7	45	0	7	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0003	1136	62	0	3	55	0	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/1	t0004	1136	30	15	10	0	3	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0005	1136	6	6	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0006	1136	5	5	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0007	1136	3	1	1	0	1	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0008	1136	3	1	1	0	0	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0009	1136	2	1	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0010	1136	2	2	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0011	1136	2	2	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0012	1136	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0013	1136	1	0	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	t0014	1136	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PM20D1_chr1_205823025_205855132	1/1	t0001	656	212	42	26	110	2	30	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	t0002	656	198	50	52	72	10	14	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	t0003	656	6	6	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D2_chr6_89141055_89170565	0/1	t0001	3398	106	11	17	67	0	10	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	1/0	t0002	3393	96	16	22	33	7	17	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0003	3392	78	14	25	33	3	3	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0004	3398	20	9	2	7	0	2	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0005	3387	10	9	1	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0006	3395	10	3	0	6	0	1	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0007	3399	8	0	3	5	0	0	copy fasta	PM20D2	chr6	89141055	89170565