JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PM20D2_chr6_89141055_89170565	0/0	t0008	3394	7	1	4	0	2	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0009	3393	5	5	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0010	3393	5	5	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0011	3393	4	4	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0012	3393	4	4	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0013	3393	4	4	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0014	3398	2	0	0	2	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0015	3393	2	0	0	0	0	2	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0016	3392	2	2	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0017	3393	2	0	0	0	2	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0018	3391	2	2	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0019	3398	1	0	0	1	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0020	3393	1	0	0	0	0	1	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0021	3392	1	0	1	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0022	3393	1	0	1	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	t0023	3393	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PMAIP1_chr18_59894996_59909305	1/1	t0001	1735	314	62	62	143	15	30	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0002	1735	72	1	8	51	3	9	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0003	1735	25	1	5	15	0	4	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0004	1736	13	11	2	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0005	1735	12	12	0	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0006	1735	4	4	0	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0007	1736	2	0	0	2	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0008	1735	2	2	0	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0009	1735	2	2	0	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0010	1735	2	0	2	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0011	1589	1	0	0	0	0	1	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0012	1735	1	0	0	1	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0013	1735	1	0	0	1	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0014	1736	1	0	0	1	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0015	1735	1	0	0	0	0	1	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0016	1735	1	0	1	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0017	1735	1	0	0	0	0	1	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0018	1736	1	0	0	1	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0019	1736	1	1	0	0	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	t0020	1735	1	0	0	1	0	0	copy fasta	PMAIP1	chr18	59894996	59909305
PMCH_chr12_102191459_102202833	1/1	t0001	257	402	96	70	187	12	35	copy fasta	PMCH	chr12	102191459	102202833
PMCH_chr12_102191459_102202833	0/0	t0002	257	1	0	0	0	0	1	copy fasta	PMCH	chr12	102191459	102202833
PMCH_chr12_102191459_102202833	0/0	t0003	257	1	0	0	1	0	0	copy fasta	PMCH	chr12	102191459	102202833
PMEL_chr12_55949105_55971042	1/1	t0001	141	396	88	86	162	18	40	copy fasta	PMEL	chr12	55949105	55971042
PMEPA1_chr20_57643396_57715015	1/0	t0001	4091	113	18	22	56	1	15	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/1	t0002	4092	57	0	9	39	2	6	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0003	4091	44	0	29	1	7	7	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0004	4092	15	8	4	2	1	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0005	4091	12	1	2	4	1	4	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0006	4092	10	9	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0007	4097	8	6	2	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0008	4091	7	7	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0009	4096	7	7	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0010	4092	6	4	2	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015