JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMEPA1_chr20_57643396_57715015	0/0	t0011	4091	5	5	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0012	4091	5	0	0	5	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0013	4082	4	1	0	2	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0014	4093	4	4	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0015	4091	4	4	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0016	4091	4	0	0	4	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0017	4092	4	4	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0018	4091	3	0	0	3	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0019	4091	3	3	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0020	4440	2	0	0	2	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0021	4092	2	2	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0022	4091	2	0	2	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0023	4091	2	2	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0024	4091	2	0	0	2	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0025	4097	2	0	0	0	1	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0026	4092	2	2	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0027	4082	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0028	4431	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0029	4082	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0030	4088	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0031	4093	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0032	4092	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0033	4092	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0034	4092	1	0	0	0	1	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0035	4095	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0036	4096	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0037	4091	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0038	4439	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0039	4096	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0040	4092	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0041	4092	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0042	4091	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0043	4091	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0044	4091	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0045	4091	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0046	4091	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0047	4091	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0048	4091	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0049	4091	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0050	4092	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0051	4092	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0052	4091	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0053	4096	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0054	4096	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0055	4096	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0056	4092	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	t0057	4091	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMF1_chr1_156208007_156245042	1/1	t0001	451	349	74	68	158	10	37	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0002	452	5	4	1	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0003	451	2	1	0	0	0	1	copy fasta	PMF1	chr1	156208007	156245042