JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMF1_chr1_156208007_156245042	0/0	t0004	451	2	0	0	0	0	2	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0005	451	2	2	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0006	451	1	1	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0007	451	1	1	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0008	451	1	0	1	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	t0009	451	1	1	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMFBP1_chr16_72114097_72177155	1/1	t0001	404	291	58	42	148	11	30	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	t0002	404	33	2	11	7	3	10	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	t0003	404	16	16	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	t0004	404	2	0	0	2	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	t0005	404	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	t0006	404	1	0	1	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMIS2_chr19_35581173_35592296	1/1	t0001	238	355	67	70	169	9	38	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	t0002	238	86	26	14	33	3	10	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	t0003	238	3	3	0	0	0	0	copy fasta	PMIS2	chr19	35581173	35592296
PML_chr15_73989716_74052827	0/1	t0001	2917	209	35	48	90	7	28	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	1/0	t0002	2917	91	19	11	45	7	8	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0003	2917	10	2	6	1	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0004	2917	7	7	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0005	2917	5	5	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0006	2917	5	5	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0007	2917	2	2	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0008	2917	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0009	2917	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0010	2917	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0011	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0012	2917	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0013	2917	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0014	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0015	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0016	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0017	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0018	2917	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0019	2917	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	t0020	2917	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PMM1_chr22_41571900_41594840	1/1	t0001	454	318	78	57	133	14	34	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	t0002	454	9	6	3	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	t0003	454	1	0	0	1	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	t0004	454	1	0	1	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	t0005	454	1	0	1	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM2_chr16_8792839_8854325	0/1	t0001	1545	140	18	27	72	7	15	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0002	1545	100	12	16	57	3	12	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0003	1545	65	7	12	37	2	7	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	1/0	t0004	1545	20	6	8	3	0	2	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0005	1545	12	11	1	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0006	1545	7	7	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0007	1545	5	5	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0008	1545	5	0	4	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0009	1545	5	5	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0010	1545	5	5	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325