JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMM2_chr16_8792839_8854325	0/0	t0011	1545	3	0	0	3	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0012	1545	3	3	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0013	1545	3	1	2	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0014	1545	3	3	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0015	1545	2	2	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0016	1545	2	2	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0017	1545	2	2	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0018	1545	2	0	1	0	1	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0019	1545	2	0	2	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0020	1545	2	2	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0021	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0022	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0023	1545	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0024	1545	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0025	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0026	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0027	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0028	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0029	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0030	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0031	1545	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0032	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0033	1545	1	0	1	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0034	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0035	1545	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0036	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0037	1545	1	0	1	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0038	1545	1	0	0	0	1	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0039	1545	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	t0040	1545	1	0	1	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMP22_chr17_15224779_15270326	0/0	t0001	1344	123	14	35	59	3	12	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	1/0	t0002	1346	109	17	12	65	1	13	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0003	1346	43	1	5	31	1	5	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/1	t0004	1346	40	1	21	0	4	13	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0005	1341	38	3	2	32	0	1	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0006	1346	38	38	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0007	1346	12	10	2	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0008	1344	9	0	5	0	2	2	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0009	1346	3	1	2	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0010	1346	2	2	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0011	1346	2	2	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0012	1346	1	1	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0013	1344	1	0	0	1	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0014	1346	1	1	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0015	1346	1	0	0	1	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0016	1344	1	0	0	0	1	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0017	1344	1	0	0	1	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	t0018	1346	1	1	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP2_chr8_81435326_81452439	1/1	t0001	3126	73	3	20	26	7	15	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0002	3126	63	9	8	43	0	3	copy fasta	PMP2	chr8	81435326	81452439