JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMP2_chr8_81435326_81452439	0/0	t0003	3126	39	0	4	35	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0004	3122	28	5	11	6	0	6	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0005	3126	21	0	6	12	0	3	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0006	3130	19	2	4	11	1	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0007	3122	17	0	1	15	1	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0008	3130	16	0	5	11	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0009	3126	16	10	4	0	1	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0010	3122	15	5	0	10	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0011	3122	12	8	1	0	0	3	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0012	3126	8	0	0	8	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0013	3110	8	6	2	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0014	3130	7	0	1	5	0	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0015	3118	7	2	2	0	1	2	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0016	3126	6	6	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0017	3118	5	4	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0018	3118	4	2	1	0	0	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0019	3130	4	0	1	3	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0020	3134	3	0	0	3	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0021	3122	3	1	1	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0022	3130	3	0	0	3	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0023	3109	3	3	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0024	3130	3	2	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0025	3125	3	2	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0026	3122	3	3	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0027	3118	3	1	0	2	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0028	3122	2	1	0	0	0	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0029	3129	2	2	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0030	3126	2	2	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0031	3126	2	2	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0032	3130	2	2	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0033	3114	2	2	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0034	3126	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0035	3118	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0036	3126	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0037	3126	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0038	3114	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0039	3118	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0040	3126	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0041	3126	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0042	3118	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0043	3125	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0044	3117	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0045	3121	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0046	3125	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0047	3126	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0048	3114	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0049	3134	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0050	3118	1	0	0	0	0	1	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0051	3130	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0052	3133	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439