JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMP2_chr8_81435326_81452439	0/0	t0053	3130	1	1	0	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0054	3122	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0055	3126	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0056	3126	1	0	0	0	1	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	t0057	3134	1	0	0	1	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMPCA_chr9_136405658_136428761	1/0	t0001	509	235	72	35	98	11	18	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/1	t0002	509	58	5	19	23	5	5	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0003	509	50	5	21	16	1	7	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0004	509	25	0	0	19	1	5	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0005	509	8	7	1	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0006	509	5	5	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0007	509	3	0	2	0	0	1	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0008	509	2	2	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0009	509	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0010	509	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0011	509	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	t0012	509	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCB_chr7_103292435_103319686	1/0	t0001	2441	254	34	54	117	10	38	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0002	2441	40	0	0	40	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0003	2439	32	0	7	19	1	5	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0004	2441	28	0	1	27	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0005	2438	13	12	1	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0006	2441	11	11	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0007	2441	9	7	1	0	1	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/1	t0008	2441	8	0	4	0	2	1	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0009	2438	8	8	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0010	2438	7	6	1	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0011	2441	6	5	1	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0012	2441	5	1	4	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0013	2441	2	0	0	2	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0014	2438	2	2	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0015	2441	2	2	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0016	2441	2	0	0	2	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0017	2438	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0018	2441	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0019	2438	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0020	2438	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0021	2441	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0022	2441	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	t0023	2441	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMS1_chr2_189779450_189882629	1/1	t0001	358	122	39	19	40	4	18	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0002	358	74	20	17	30	4	3	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0003	358	16	16	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0004	358	14	14	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0005	358	3	3	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0006	358	2	0	0	2	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0007	358	2	2	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	t0008	358	1	0	0	0	0	1	copy fasta	PMS1	chr2	189779450	189882629
PMS2_chr7_5965925_6014049	0/0	t0001	2501	124	14	15	73	7	15	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0002	2506	68	2	10	47	2	7	copy fasta	PMS2	chr7	5965925	6014049