Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP11C_chrX_139721348_139938053	0/0	t0034	3630	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	t0035	3630	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP12A_chr13_24675408_24717472	1/0	t0001	1287	244	55	50	101	10	27	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/1	t0002	1287	26	6	2	10	1	6	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0003	1287	25	0	7	10	1	7	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0004	1287	24	8	4	8	1	3	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0005	1287	24	6	1	14	1	2	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0006	1287	17	16	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0007	1287	6	0	0	6	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0008	1287	3	0	3	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0009	1287	3	3	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0010	1287	2	0	0	1	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0011	1287	2	0	0	2	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0012	1287	2	0	0	2	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0013	1287	1	0	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0014	1287	1	1	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0015	1287	1	1	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	t0016	1287	1	0	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP13A1_chr19_19640198_19668676	1/1	t0001	235	349	72	64	149	14	48	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	t0002	235	17	17	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	t0003	232	13	0	2	9	2	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	t0004	235	1	1	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A2_chr1_16980958_17016928	1/1	t0001	454	354	91	55	156	12	38	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0002	454	3	1	2	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0003	454	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0004	454	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0005	454	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0006	454	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0007	454	1	0	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0008	454	1	0	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	t0009	454	1	0	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A3_chr3_194397677_194492002	0/1	t0001	3768	69	9	22	19	3	15	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0002	3767	60	26	7	21	0	6	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0003	3768	39	0	1	38	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0004	3770	14	2	5	1	1	5	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0005	3768	10	9	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0006	3767	10	1	0	9	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0007	3768	8	8	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0008	3769	7	0	1	6	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0009	3767	6	6	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0010	3768	6	6	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0011	3768	5	1	0	3	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0012	3769	4	4	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0013	3769	4	1	1	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0014	3767	4	4	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0015	3769	4	0	1	1	0	2	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0016	3769	4	0	0	4	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0017	3769	3	0	0	3	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0018	3770	3	1	2	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0019	3769	3	0	1	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002