JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMS2_chr7_5965925_6014049	1/0	t0003	2505	40	9	14	12	1	3	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0004	2504	32	3	7	13	3	6	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/1	t0005	2504	30	8	12	2	3	4	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0006	2506	15	0	2	11	0	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0007	2504	10	10	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0008	2506	9	0	3	3	0	3	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0009	2506	9	9	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0010	2506	7	6	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0011	2505	6	5	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0012	2506	4	0	4	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0013	2504	3	3	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0014	2502	3	2	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0015	2507	2	0	1	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0016	2505	2	0	0	2	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0017	2506	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0018	2501	2	0	0	2	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0019	2505	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0020	2504	2	1	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0021	2501	2	0	0	2	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0022	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0023	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0024	2506	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0025	2505	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0026	2506	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0027	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0028	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0029	2506	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0030	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0031	2506	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0032	2506	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0033	2506	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0034	2506	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0035	2506	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0036	2506	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0037	2506	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0038	2504	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0039	2505	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0040	2508	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0041	2505	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0042	2505	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0043	2504	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0044	2504	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0045	2504	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0046	2504	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0047	2504	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0048	2501	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0049	2501	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0050	2501	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0051	2501	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0052	2501	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049