JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PMS2_chr7_5965925_6014049	0/0	t0053	2501	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0054	2504	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	t0055	2504	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMVK_chr1_154919740_154941719	1/1	t0001	424	267	79	50	90	10	36	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0002	423	17	17	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0003	424	4	0	2	0	2	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0004	428	2	0	0	2	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0005	428	2	0	0	2	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0006	424	1	0	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	t0007	424	1	0	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PNCK_chrX_153664733_153678813	1/1	t0001	442	222	40	44	100	11	25	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0002	443	21	7	0	13	0	1	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0003	442	18	16	2	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0004	442	5	5	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0005	442	4	4	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0006	442	2	0	0	2	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0007	442	1	1	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0008	442	1	1	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0009	441	1	1	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	t0010	442	1	1	0	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNISR_chr6_99393050_99430308	0/1	t0001	2696	196	34	31	108	5	17	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	1/0	t0002	2696	168	42	33	62	7	23	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0003	2696	21	0	16	0	2	3	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0004	2696	5	4	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0005	2696	2	0	1	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0006	2696	2	0	0	2	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0007	2696	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0008	2696	1	0	1	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0009	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0010	2696	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0011	2696	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0012	2696	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0013	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0014	2696	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0015	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0016	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0017	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	t0018	2696	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNKD_chr2_218265519_218351793	0/0	t0001	1830	103	12	28	44	6	13	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/1	t0002	1830	60	23	15	12	5	4	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0003	1830	38	24	3	10	0	1	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0004	1832	21	0	3	14	1	3	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0005	1830	20	6	3	4	0	7	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0006	1830	8	0	5	3	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	1/0	t0007	1830	5	4	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0008	1830	4	4	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0009	1830	4	4	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0010	1830	3	3	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0011	1832	3	3	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0012	1830	2	2	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793