JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNKD_chr2_218265519_218351793	0/0	t0013	1830	2	0	0	2	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0014	1830	2	2	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0015	1830	1	0	1	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0016	1830	1	1	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0017	1830	1	1	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0018	1830	1	1	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	t0019	1830	1	0	0	1	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKP_chr19_49856204_49872576	1/1	t0001	166	426	91	76	197	12	48	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	t0002	166	2	0	0	0	0	2	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	t0003	166	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	t0004	166	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNLDC1_chr6_159795276_159825704	1/1	t0001	220	382	76	73	171	16	44	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	t0002	220	12	12	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	t0003	220	2	2	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	t0004	220	2	1	1	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	t0005	220	1	1	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	t0006	220	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLIPRP1_chr10_116585959_116614175	1/1	t0001	97	419	93	82	182	16	44	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	t0002	97	1	1	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP3_chr10_116422847_116482957	0/1	t0001	971	90	8	14	47	5	15	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0002	971	40	18	9	11	1	1	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0003	971	37	23	0	14	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0004	971	34	4	8	17	0	5	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0005	971	31	10	0	20	0	1	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	1/0	t0006	971	25	12	6	6	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0007	971	14	8	0	6	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0008	971	12	1	2	9	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0009	971	2	1	1	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0010	971	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0011	971	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	t0012	971	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIP_chr10_116540931_116572855	1/1	t0001	86	275	82	37	126	2	26	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	t0002	79	1	0	1	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNMA1_chr14_73706783_73719384	0/0	t0001	1541	247	57	35	122	6	27	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	1/1	t0002	1541	48	1	17	19	3	6	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0003	1541	46	8	3	32	2	1	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0004	1534	35	4	20	2	3	6	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0005	1541	7	7	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0006	1541	6	0	3	3	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0007	1541	6	6	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0008	1545	3	0	0	3	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0009	1541	3	3	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0010	1541	2	2	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0011	1534	2	2	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0012	1541	2	2	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0013	1541	1	0	0	1	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0014	1541	1	1	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0015	1541	1	1	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0016	1541	1	0	0	1	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0017	1541	1	0	0	1	0	0	copy fasta	PNMA1	chr14	73706783	73719384