JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA1_chr14_73706783_73719384	0/0	t0018	1541	1	0	0	1	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	t0019	1530	1	0	0	1	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA2_chr8_26499701_26518872	0/0	t0001	3636	144	3	24	99	9	9	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0002	3636	104	11	21	54	3	15	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	1/0	t0003	3636	65	44	10	0	1	9	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/1	t0004	3639	24	3	2	7	0	11	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0005	3636	11	0	7	0	2	2	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0006	3638	10	0	2	8	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0007	3636	7	7	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0008	3638	5	5	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0009	3636	5	0	3	2	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0010	3638	5	5	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0011	3636	4	3	1	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0012	3636	4	2	2	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0013	3636	2	0	0	2	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0014	3636	2	0	0	2	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0015	3636	2	2	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0016	3636	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0017	3636	1	0	0	0	0	1	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0018	3636	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0019	3636	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0020	3638	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0021	3639	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0022	3637	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0023	3639	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0024	3636	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0025	3636	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0026	3636	1	0	1	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0027	3636	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0028	3636	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0029	3639	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0030	3636	1	0	0	0	0	1	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0031	3636	1	0	0	0	0	1	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0032	3636	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0033	3636	1	0	0	0	1	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0034	3636	1	0	0	0	0	1	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0035	3636	1	0	1	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0036	3636	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	t0037	3639	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA3_chrX_153051470_153065462	1/0	t0001	2291	75	4	12	55	0	3	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0002	2294	65	1	11	40	4	9	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0003	2294	33	4	2	20	0	7	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/1	t0004	2294	25	10	8	1	1	4	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0005	2294	19	7	6	2	1	3	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0006	2294	14	6	4	1	2	1	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0007	2294	12	12	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0008	2294	11	0	11	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0009	2294	6	5	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0010	2294	6	5	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0011	2294	4	0	0	4	0	0	copy fasta	PNMA3	chrX	153051470	153065462