JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA3_chrX_153051470_153065462	0/0	t0012	2294	3	2	0	0	1	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0013	2294	3	0	1	0	0	2	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0014	2294	3	3	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0015	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0016	2294	2	0	0	2	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0017	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0018	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0019	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0020	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0021	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0022	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0023	2294	2	2	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0024	2295	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0025	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0026	2294	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0027	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0028	2294	1	0	0	0	0	1	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0029	2294	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0030	2291	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0031	2294	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0032	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0033	2291	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0034	2291	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0035	2291	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0036	2291	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0037	2291	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0038	2294	1	0	0	0	0	1	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0039	2294	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0040	2294	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0041	2294	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0042	2294	1	0	0	0	0	1	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0043	2293	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0044	2294	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0045	2294	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0046	2294	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0047	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0048	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0049	2294	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0050	2295	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0051	2294	1	0	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	t0052	2293	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA5_chrX_152983824_152999116	1/1	t0001	1842	187	47	30	81	6	21	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0002	1842	71	9	16	37	1	8	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0003	1842	4	0	0	4	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0004	1842	4	4	0	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0005	1842	3	3	0	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0006	1842	2	2	0	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0007	1843	2	0	1	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0008	1843	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0009	1827	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116