JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA5_chrX_152983824_152999116	0/0	t0010	1841	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0011	1842	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0012	1842	1	0	0	0	0	1	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0013	1843	1	0	0	0	0	1	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0014	1843	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0015	1842	1	1	0	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0016	1842	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0017	1842	1	0	0	0	0	1	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0018	1821	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0019	1839	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	t0020	1844	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA6A_chrX_153067454_153080019	1/0	t0001	1039	26	9	3	5	3	5	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0002	1039	18	0	3	15	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0003	1039	9	0	1	7	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0004	1039	3	2	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0005	1039	3	0	2	0	1	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0006	1039	2	0	0	1	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0007	1040	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0008	1040	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0009	1041	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0010	1048	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0011	1042	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0012	1041	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0013	1040	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0014	1041	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0015	1042	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0016	1039	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0017	1040	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0018	1033	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/1	t0019	1039	1	0	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0020	1039	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0021	1035	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0022	1040	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0023	1040	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0024	1031	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0025	1040	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0026	1040	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0027	1040	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0028	1039	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0029	1039	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0030	1032	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	t0031	1040	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6E_chrX_153390639_153406350	0/0	t0001	1446	110	31	23	39	5	12	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0002	1446	92	12	17	50	3	10	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	1/1	t0003	1446	62	1	14	36	0	9	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0004	1446	8	7	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0005	1446	8	0	4	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0006	1446	6	6	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0007	1446	4	3	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0008	1446	4	0	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350