JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA6E_chrX_153390639_153406350	0/0	t0009	1446	4	4	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0010	1446	3	2	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0011	1446	3	0	0	3	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0012	1447	3	1	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0013	1446	3	1	1	0	1	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0014	1446	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0015	1446	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0016	1446	2	0	0	1	0	1	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0017	1446	2	0	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0018	1446	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0019	1446	2	0	0	0	2	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0020	1446	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0021	1445	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0022	1447	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0023	1447	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0024	1443	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0025	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0026	1446	1	0	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0027	1446	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0028	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0029	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0030	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0031	1446	1	0	0	0	0	1	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0032	1446	1	0	0	0	0	1	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0033	1447	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0034	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0035	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0036	1447	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0037	1447	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0038	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0039	1444	1	0	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0040	1446	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0041	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0042	1449	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	t0043	1446	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6F_chrX_153312680_153326767	0/0	t0001	1558	83	0	16	57	2	8	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0002	1558	59	4	16	30	3	6	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0003	1558	56	16	1	38	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	1/1	t0004	1558	50	4	18	7	4	15	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0005	1558	9	9	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0006	1558	9	9	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0007	1558	7	5	2	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0008	1558	6	5	1	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0009	1558	6	6	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0010	1558	4	3	1	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0011	1558	4	0	1	1	2	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0012	1558	4	4	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0013	1558	3	3	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0014	1558	2	0	0	2	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0015	1558	2	0	0	2	0	0	copy fasta	PNMA6F	chrX	153312680	153326767