JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA6F_chrX_153312680_153326767	0/0	t0016	1558	2	1	0	0	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0017	1558	2	0	0	1	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0018	1558	2	1	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0019	1558	2	2	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0020	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0021	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0022	1559	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0023	1556	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0024	1558	1	0	0	0	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0025	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0026	1557	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0027	1558	1	0	0	0	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0028	1559	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0029	1558	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0030	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0031	1558	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0032	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0033	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0034	1568	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0035	1545	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0036	1559	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0037	1559	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	t0038	1558	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA8A_chr19_46461503_46476563	0/0	t0001	2369	84	7	17	54	3	3	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0002	2371	68	6	12	39	1	10	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0003	2365	50	13	2	27	2	6	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/1	t0004	2365	39	4	13	14	3	4	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0005	2373	32	3	12	0	3	14	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0006	2369	21	2	3	11	0	5	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0007	2365	20	2	10	2	5	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0008	2371	17	5	1	11	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0009	2365	11	6	3	1	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0010	2371	11	1	1	8	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0011	2365	10	0	0	10	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0012	2366	7	6	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0013	2369	7	0	0	7	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0014	2369	5	5	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0015	2371	5	0	0	5	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0016	2373	5	0	0	4	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0017	2365	4	1	3	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0018	2369	4	4	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0019	2371	3	3	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0020	2365	3	1	0	0	0	2	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0021	2369	3	3	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0022	2369	3	3	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0023	2367	3	0	1	2	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0024	2365	3	2	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0025	2365	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0026	2367	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0027	2367	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563