JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA8A_chr19_46461503_46476563	0/0	t0028	2369	2	0	0	2	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0029	2363	2	0	0	2	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0030	2366	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0031	2367	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0032	2369	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0033	2365	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0034	2365	1	0	0	0	1	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0035	2365	1	0	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0036	2365	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	1/0	t0037	2365	1	0	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0038	2367	1	0	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0039	2369	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0040	2371	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0041	2365	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0042	2297	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0043	2361	1	0	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0044	2365	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0045	2373	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0046	2369	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0047	2369	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0048	2371	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0049	2371	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0050	2369	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0051	2365	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0052	2371	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	t0053	2369	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8B_chr19_46486191_46500867	0/1	t0001	2770	141	7	32	75	4	22	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0002	2770	102	28	16	54	0	4	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	1/0	t0003	2770	47	14	19	3	5	5	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0004	2770	45	12	2	24	2	5	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0005	2770	25	0	2	17	1	5	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0006	2770	23	8	1	14	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0007	2770	8	5	3	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0008	2770	7	6	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0009	2770	3	3	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0010	2770	3	2	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0011	2770	2	0	0	1	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0012	2770	2	2	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0013	2770	2	0	0	2	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0014	2770	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0015	2770	1	0	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0016	2770	1	0	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0017	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0018	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0019	2770	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0020	2770	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0021	2770	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0022	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0023	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0024	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867